# pkpdbib

> Python utilities for PK/PD literature and bibliography management

The links below point to the markdown source of the documentation. [llms-full.txt](https://matthiaskoenig.github.io/pkpdbib/llms-full.txt) contains all of it in a single file.

## Documentation

- [Home](https://matthiaskoenig.github.io/pkpdbib/index.md): `pkpdbib` is a collection of python utilities for working with pharmacokinetics/pharmacodynamics (PK/PD) literature and bibliographies.
- [Installation](https://matthiaskoenig.github.io/pkpdbib/installation.md): `pkpdbib` requires python >= 3.13 and is available from pypi.
- [Contributing](https://matthiaskoenig.github.io/pkpdbib/development.md): Contributions are welcome.

## User guide

- [PDF retrieval](https://matthiaskoenig.github.io/pkpdbib/pdfs.md): `pkpdbib.scihub_tools` downloads the PDFs of the DOIs of a Zotero export via scidownl.
- [Zotero libraries](https://matthiaskoenig.github.io/pkpdbib/zotero.md): `pkpdbib.zotero_tools` provides programmatic access to Zotero libraries via pyzotero and creates tables of the tags of their items with polars.

## API reference

- [Overview](https://matthiaskoenig.github.io/pkpdbib/api/index.md): The API reference is generated from the docstrings of the package.
- [scihub_tools](https://matthiaskoenig.github.io/pkpdbib/api/scihub_tools.md): Retrieve the PDFs of DOIs via Sci-Hub.
- [zotero_tools](https://matthiaskoenig.github.io/pkpdbib/api/zotero_tools.md): Programmatic access to Zotero libraries.
- [console](https://matthiaskoenig.github.io/pkpdbib/api/console.md): Shared rich console of the package.
- [log](https://matthiaskoenig.github.io/pkpdbib/api/log.md): Logging of the package, rendered with rich.

## Optional

- [Repository](https://github.com/matthiaskoenig/pkpdbib): source code, issues and releases.
- [Sitemap](https://matthiaskoenig.github.io/pkpdbib/sitemap.xml): all pages of the rendered site.
- [objects.inv](https://matthiaskoenig.github.io/pkpdbib/objects.inv): the API objects of the reference as a sphinx inventory.