pymetadata: python utilities for metadata and COMBINE archives

pymetadata is a collection of python utilities for working with metadata in the context of COMBINE standards with source code available from https://github.com/matthiaskoenig/pymetadata.

Features include among others

COMBINE archive version 1 support (OMEX)
annotation classes and helpers
SBO, KISAO and ECO ontology enums

If you have any questions or issues please open an issue.

Documentation is available from https://matthiaskoenig.github.io/pymetadata.

How to cite

License

Source Code: MIT
Documentation: CC BY-SA 4.0

Funding

Matthias König is supported and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 “QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)” by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).

Matthias König was supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054).