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Standards

sed-ml

Software & Libraries

Cytoscape (visualization)

cy2sbml
cy2fluxviz
cy2sabiork
cy2reposition

cy3sbml
cy3robundle
cy3sabiork
cy3fluxviz
cy-dataseries

Python (Modelling & Model management)

roadrunner
tellurium
tellurium-web
libsbgn-python
sbmlutils
dfba
modelmanager

Modelling

liver metabolism

multiscale-galactose
glucose-model
hepatonet
pkpd

acetaminophen
antipyrine
caffeine
codeine
metacethin
indocyanine green

wholecell

wholecell-reduced
wholecell-metabolism

System setup

linux-setup

Homepage

livermetabolism.com