simulator.simulation_serial¶

Serial simulator.

SimulatorSerial ¶

SimulatorSerial(model=None, **kwargs)

Serial simulator using a single core.

A single simulator can run many different models. See the parallel simulator to run simulations on multiple cores.

Initialize serial simulator.

:param model: Path to model or model :param kwargs: integrator settings

model_loaded

Model of the simulator, raises if no model is set.

r_loaded

Roadrunner instance of the simulator, raises if no model is set.

uinfo

Get model unit information.

Q_

Quantity of the unit registry of the model.

set_model(model)

Set model for simulator and updates the integrator settings.

set_integrator_settings(**kwargs)

Set settings in the integrator.

set_timecourse_selections(selections)

Set timecourse selection in model.

run_timecourse(simulation)

Run single timecourse.

run_scan(scan)

Run a scan simulation.