fit.petab_omex¶

COMBINE archive for PEtab problems.

create_petab_omex ¶

create_petab_omex(omex_file, yaml_file)

Create a COMBINE archive for a PEtab problem.

The YAML file of the PEtab problem is the master entry of the archive, all files it references are added relative to the directory of the YAML file.

Parameters:

Name	Type	Description	Default
`omex_file`	`Path`	path of the COMBINE archive to write.	required
`yaml_file`	`Path`	path of the PEtab YAML file, all other files are relative to it.	required

Raises:

Type	Description
`FileNotFoundError`	if the YAML file or a referenced file does not exist.