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combine.sedml.io

Template functions to run the example cases.

SEDMLInputType

Bases: Enum

Types of SED-ML input.

SED-ML can be read from string, file or a COMBINE archive (or zip archives).

SEDMLReader 

SEDMLReader(source, working_dir=None)

Class for reading SED-ML document from various sources.

SED-ML can be provided as string, file or as file in a COMBINE archive.

Execution must be performed where the master SED-ML is located.

Initialize SEDMLReader.

read_sedml 

read_sedml()

Read SedMLDocument.

Sets the instance variables as a result.

check_sedml_doc 

check_sedml_doc(sed_doc)

Check SedDocument for errors.

Logs errors and warnings

:param sed_doc: SedDocument. :return SedErrorLog.