testsuite.submission¶

The submission of the results to the SBML Test Suite Database.

A submission is an archive with the results of every case which could be simulated, one CSV per case named after it, and a manifest with the versions the results were produced with. A case which the simulator cannot read or integrate has no results and is left out, which is how a submission says that it does not support the case. Uploading the archive is a deliberate step and is not done here.

case_csv ¶

case_csv(case)

Simulate a case and write its results as the submission names them.

The function runs in the processes of map_cases, which do not share the logging of the process which started them, so it answers with the reason rather than logging it.

Parameters:

Name	Type	Description	Default
`case`	`SemanticCase`	the case to simulate.	required

Returns:

Type	Description
`str \| None`	The CSV of the results and an empty message, or `None` and why the case
`str`	could not be read or integrated.

write_submission ¶

write_submission(suite, output_dir, workers=None)

Write the archive which is submitted to the SBML Test Suite Database.

Parameters:

Name	Type	Description	Default
`suite`	`SemanticSuite`	the suite to run.	required
`output_dir`	`Path`	directory the archive is written into.	required
`workers`	`int \| None`	number of processes the cases are simulated in, the cores available to this process by default.	`None`

Returns:

Type	Description
`Path`	Path of the archive.